These v3.0 stratification BED files from the Global Alliance for Genomic Health (GA4GH) Benchmarking Team, the Genome in a Bottle Consortium and the Telomere-to-Telomere Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls in challenging and targeted regions of the the genome. v3.0 stratifications contain new and revised stratification files and replace v2.0 stratifications.
About this Dataset
Title | Genome In A Bottle - v3.0 Genome Stratifications |
---|---|
Description | These v3.0 stratification BED files from the Global Alliance for Genomic Health (GA4GH) Benchmarking Team, the Genome in a Bottle Consortium and the Telomere-to-Telomere Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls in challenging and targeted regions of the the genome. v3.0 stratifications contain new and revised stratification files and replace v2.0 stratifications. |
Modified | 2021-11-08 00:00:00 |
Publisher Name | National Institute of Standards and Technology |
Contact | mailto:[email protected] |
Keywords | Human genomics; DNA sequencing; Reference materials |
{ "identifier": "ark:\/88434\/mds2-2499", "accessLevel": "public", "contactPoint": { "hasEmail": "mailto:[email protected]", "fn": "Justin Zook" }, "programCode": [ "006:045" ], "landingPage": "https:\/\/data.nist.gov\/od\/id\/mds2-2499", "title": "Genome In A Bottle - v3.0 Genome Stratifications", "description": "These v3.0 stratification BED files from the Global Alliance for Genomic Health (GA4GH) Benchmarking Team, the Genome in a Bottle Consortium and the Telomere-to-Telomere Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls in challenging and targeted regions of the the genome. v3.0 stratifications contain new and revised stratification files and replace v2.0 stratifications.", "language": [ "en" ], "distribution": [ { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/GRCh37_stratification_post-processing.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/GRCh37_stratification_post-processing.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/GRCh38_stratification_post-processing.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/GRCh38_stratification_post-processing.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/PSA_Y_GRCh38.bed", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/PSA_Y_GRCh38.bed.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/PSA_Y_hg19.bed", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/PSA_Y_hg19.bed.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/gap_38_1thruY_sorted_merged.bed", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/gap_38_1thruY_sorted_merged.bed.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/gaps-PSAY-README_37.txt", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/gaps-PSAY-README_37.txt.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/gaps-PSAY-README_38.txt", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/gaps-PSAY-README_38.txt.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/hg38.README_annotation.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/dependency-files\/hg38.README_annotation.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/stratification-file-crosswalk-GRCh37.tsv", "mediaType": "text\/tab-separated-values" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/stratification-file-crosswalk-GRCh37.tsv.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/stratification-file-crosswalk-GRCh38.tsv", "mediaType": "text\/tab-separated-values" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/stratification-file-crosswalk-GRCh38.tsv.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/v2.01.00_stratification_post-processing.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/v2.01.00_stratification_post-processing.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/FunctionalRegions\/GRCh37-FunctionalRegions-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/FunctionalRegions\/GRCh37-FunctionalRegions-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/FunctionalRegions\/create_GRCh37_cds_bed.Rmd", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/FunctionalRegions\/create_GRCh37_cds_bed.Rmd.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/FunctionalRegions\/create_GRCh37_cds_bed.pdf", "mediaType": "application\/pdf" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/FunctionalRegions\/create_GRCh37_cds_bed.pdf.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/FunctionalTechnicallyDifficult\/GRCh37-FunctionalTechnicallyDifficult-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/FunctionalTechnicallyDifficult\/GRCh37-FunctionalTechnicallyDifficult-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/FunctionalTechnicallyDifficult\/MRG_falsely_duplicated.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/FunctionalTechnicallyDifficult\/MRG_falsely_duplicated.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GCcontent\/GRCh37-GCcontent-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GCcontent\/GRCh37-GCcontent-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GCcontent\/seqtk_gc.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GCcontent\/seqtk_gc.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GRCh37-GenomeSpecific-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GRCh37-GenomeSpecific-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GRCh37_Generating_v4.1_excluded_beds.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GRCh37_Generating_v4.1_excluded_beds.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GRCh37_HG002_hifiasmv0.11_ComplexVar_in_TRgt100.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GRCh37_HG002_hifiasmv0.11_ComplexVar_in_TRgt100.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GRCh37_HG002_medical_genes_benchmark_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GRCh37_HG002_medical_genes_benchmark_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG001_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG006_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG007_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG007_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/Snakefile", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/Snakefile.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/envs\/bedtools.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/envs\/bedtools.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/envs\/vcflib.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/envs\/vcflib.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG001_GRCh37_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG001_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG003_GRCh37_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG003_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG004_GRCh37_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG004_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG005_GRCh37_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG005_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG006_GRCh37_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG006_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG007_GRCh37_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/HG007_GRCh37_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/LowComplexity\/FindSimpleRepeats_v2.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG001_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG002_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG002_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG003_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/LowComplexity\/FindSimpleRepeats_v2.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/LowComplexity\/GRCh37-LowComplexity-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/LowComplexity\/GRCh37-LowComplexity-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/LowComplexity\/GRCh37_SimpleRepeat_homopolymer_gt20.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/LowComplexity\/GRCh37_SimpleRepeat_homopolymer_gt20.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/LowComplexity\/GRCh37_SimpleRepeat_imperfecthomoplgt20_slop5.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/LowComplexity\/GRCh37_SimpleRepeat_imperfecthomoplgt20_slop5.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/LowComplexity\/findSimpleRegions_quad.py", "mediaType": "text\/x-python" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/LowComplexity\/findSimpleRegions_quad.py.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/OtherDifficult\/GRCh37-OtherDifficult-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/OtherDifficult\/GRCh37-OtherDifficult-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/OtherDifficult\/GRCh37_Generating_v4.1_excluded_beds.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/OtherDifficult\/GRCh37_Generating_v4.1_excluded_beds.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/OtherDifficult\/merge_difficult_regions_GRCh37_2.01.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/CHANGELOG", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/CHANGELOG.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/GIAB-v3.0-stratifications-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/GIAB-v3.0-stratifications-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG003_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG004_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG004_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG005_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG005_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh37_HG006_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/GIAB-stratifications-post-processing-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/post-processing\/GIAB-stratifications-post-processing-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/FunctionalRegions\/create_GRCh38_cds_bed.Rmd", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/FunctionalRegions\/create_GRCh38_cds_bed.Rmd.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/FunctionalRegions\/create_GRCh38_cds_bed.pdf", "mediaType": "application\/pdf" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/FunctionalRegions\/create_GRCh38_cds_bed.pdf.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/FunctionalTechnicallyDifficult\/GRCh38-FunctionalTechnicallyDifficult-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/FunctionalTechnicallyDifficult\/GRCh38-FunctionalTechnicallyDifficult-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/FunctionalTechnicallyDifficult\/MRG_falsely_duplicated.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/FunctionalTechnicallyDifficult\/MRG_falsely_duplicated.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GCcontent\/GRCh38-GCcontent-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GCcontent\/GRCh38-GCcontent-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GCcontent\/grch38_seqtk_gc.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GCcontent\/grch38_seqtk_gc.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GRCh38-GenomeSpecific-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GRCh38-GenomeSpecific-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GRCh38_Generating_v4.1_excluded_beds.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GRCh38_Generating_v4.1_excluded_beds.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GRCh38_HG002_hifiasmv0.11_ComplexVar_in_TRgt100.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GRCh38_HG002_hifiasmv0.11_ComplexVar_in_TRgt100.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GRCh38_HG002_medical_genes_benchmark_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GRCh38_HG002_medical_genes_benchmark_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG001_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG001_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG002_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG002_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG003_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG003_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG004_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/OtherDifficult\/merge_difficult_regions_GRCh37_2.01.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/SegmentalDuplications\/GRCh37-SegDups-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG004_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG005_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG005_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG006_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG006_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/SegmentalDuplications\/GRCh37-SegDups-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/SegmentalDuplications\/GRCh37_Generating_v4.1_excluded_beds.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/SegmentalDuplications\/GRCh37_Generating_v4.1_excluded_beds.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/SegmentalDuplications\/GRCh37_new_chainSelf_and_Segdups.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/SegmentalDuplications\/GRCh37_new_chainSelf_and_Segdups.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/mappability\/GRCh37-mappability-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/mappability\/GRCh37-mappability-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/mappability\/make_all_and_notin_beds.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/mappability\/make_all_and_notin_beds.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/mappability\/run_GEM_mappability.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/mappability\/run_GEM_mappability.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/union\/GRCh37-union-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/union\/GRCh37-union-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/union\/merge_difficult_regions_GRCh37_2.01.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh37\/union\/merge_difficult_regions_GRCh37_2.01.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/FunctionalRegions\/GRCh38-FunctionalRegions-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/FunctionalRegions\/GRCh38-FunctionalRegions-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG007_v4.2.1_GenomeSpecific_config.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/config\/GRCh38_HG007_v4.2.1_GenomeSpecific_config.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/Snakefile", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/Snakefile.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/envs\/bedtools.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/envs\/bedtools.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/envs\/vcflib.yaml", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/GS-snakemake-pipeline\/workflow\/envs\/vcflib.yaml.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG001_GRCh38_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG001_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG003_GRCh38_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/LowComplexity\/GRCh38_SimpleRepeat_imperfecthomoplgt20_slop5.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/LowComplexity\/GRCh38-LowComplexity-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/LowComplexity\/GRCh38-LowComplexity-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/LowComplexity\/GRCh38_SimpleRepeat_homopolymer_gt20.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/LowComplexity\/GRCh38_SimpleRepeat_homopolymer_gt20.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG003_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG004_GRCh38_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG004_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG005_GRCh38_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG005_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG006_GRCh38_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG006_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG007_GRCh38_CNV_exclusion_bed_generation.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/GenomeSpecific\/HG007_GRCh38_CNV_exclusion_bed_generation.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/LowComplexity\/FindSimpleRepeats_GRCh38_v2.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/LowComplexity\/FindSimpleRepeats_GRCh38_v2.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/LowComplexity\/GRCh38_SimpleRepeat_imperfecthomoplgt20_slop5.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/LowComplexity\/findSimpleRegions_quad.py", "mediaType": "text\/x-python" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/LowComplexity\/findSimpleRegions_quad.py.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/OtherDifficult\/GRCh38-OtherDifficult-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/OtherDifficult\/GRCh38-OtherDifficult-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/OtherDifficult\/GRCh38_Generating_v4.1_excluded_beds.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/OtherDifficult\/GRCh38_Generating_v4.1_excluded_beds.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/OtherDifficult\/merge_difficult_regions_GRCh38_2.01.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/OtherDifficult\/merge_difficult_regions_GRCh38_2.01.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/SegmentalDuplications\/GRCh38-SegDups-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/SegmentalDuplications\/GRCh38-SegDups-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/SegmentalDuplications\/GRCh38_Generating_v4.1_excluded_beds.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/SegmentalDuplications\/GRCh38_Generating_v4.1_excluded_beds.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/SegmentalDuplications\/GRCh38_new_chainSelf_and_Segdups.ipynb", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/SegmentalDuplications\/GRCh38_new_chainSelf_and_Segdups.ipynb.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/ancestry\/GRCh38-ancestry-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/ancestry\/GRCh38-ancestry-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/mappability\/GRCh38-mappability-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/mappability\/GRCh38-mappability-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/mappability\/run_GEM_mappability_GRCh38.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/mappability\/run_GEM_mappability_GRCh38.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/union\/GRCh38-union-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/mappability\/run_GEM_mappability_sort_GRCh38.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/mappability\/run_GEM_mappability_sort_GRCh38.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/union\/GRCh38-union-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/union\/merge_difficult_regions_GRCh38_2.01.sh", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/stratification-generation\/GRCh38\/union\/merge_difficult_regions_GRCh38_2.01.sh.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/v3.0-stratifications-GRCh37.tar.gz", "mediaType": "application\/gzip" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/v3.0-stratifications-GRCh37.tar.gz.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/v3.0-stratifications-GRCh38.tar.gz", "mediaType": "application\/gzip" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/v3.0-stratifications-GRCh38.tar.gz.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/GIAB-stratifications-validation-README.md", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/GIAB-stratifications-validation-README.md.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/dependency-files\/README_for_genome_bed_files", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/dependency-files\/README_for_genome_bed_files.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/dependency-files\/human.b37.1_22XY.genome.sorted_noNs_noPSAY_merged.bed", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/dependency-files\/human.b37.1_22XY.genome.sorted_noNs_noPSAY_merged.bed.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/dependency-files\/human.hg38.1_22XY.genome.sorted_noNs_noPSAY_merged.bed", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/dependency-files\/human.hg38.1_22XY.genome.sorted_noNs_noPSAY_merged.bed.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/dependency-files\/v3.0-stratfications-info.csv", "mediaType": "text\/csv" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/dependency-files\/v3.0-stratfications-info.csv.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/v3.0-stratification_validation.Rmd", "mediaType": "application\/octet-stream" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/v3.0-stratification_validation.Rmd.sha256", "mediaType": "text\/plain" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/v3.0-stratification_validation.pdf", "mediaType": "application\/pdf" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-2499\/validation\/v3.0-stratification_validation.pdf.sha256", "mediaType": "text\/plain" }, { "accessURL": "https:\/\/doi.org\/10.18434\/mds2-2499", "title": "DOI Access for Genome In A Bottle - v3.0 Genome Stratifications" } ], "bureauCode": [ "006:55" ], "modified": "2021-11-08 00:00:00", "publisher": { "@type": "org:Organization", "name": "National Institute of Standards and Technology" }, "theme": [ "Health:Precision medicine" ], "keyword": [ "Human genomics; DNA sequencing; Reference materials" ] }