Data provided by National Institute of Standards and Technology
This work involves only data processing software and does not involve data to publish. Data are acquired by the users of this software by the following methods. Two methods can be used to acquire images of agar plates with bacterial colonies grown. In the first, plates were placed on a flatbed scanner, covered by soft gloss paper (HP LaserJet soft gloss paper), and 8-bit grayscale images of the plates were obtained at 300 dpi (dots per inch; 118 dots per cm), 600 dpi (236 dots per cm), and 1,200 dpi (472 dots per cm). In the second approach, images are acquired with a digital camera. Images are acquired at the maximum resolution of the camera with no zoom. More details are described in the manual for the software.
About this Dataset
Updated: 2024-02-22
Metadata Last Updated:
2018-06-30 00:00:00
Date Created:
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Data Provided by:
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| Title | NIST's Integrated Colony Enumerator |
|---|---|
| Description | This work involves only data processing software and does not involve data to publish. Data are acquired by the users of this software by the following methods. Two methods can be used to acquire images of agar plates with bacterial colonies grown. In the first, plates were placed on a flatbed scanner, covered by soft gloss paper (HP LaserJet soft gloss paper), and 8-bit grayscale images of the plates were obtained at 300 dpi (dots per inch; 118 dots per cm), 600 dpi (236 dots per cm), and 1,200 dpi (472 dots per cm). In the second approach, images are acquired with a digital camera. Images are acquired at the maximum resolution of the camera with no zoom. More details are described in the manual for the software. |
| Modified | 2018-06-30 00:00:00 |
| Publisher Name | National Institute of Standards and Technology |
| Contact | mailto:[email protected] |
| Keywords | bacteria colony counting; pneumonia; pneumococcus; vaccine; counting software; fieldable imaging; multiplexed opsonophagocytic killing assay; |
{
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"accessLevel": "public",
"contactPoint": {
"hasEmail": "mailto:[email protected]",
"fn": "Jeeseong C. Hwang"
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"programCode": [
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"landingPage": "https:\/\/data.nist.gov\/od\/id\/89811452D29952B5E05324570681C0AF2073",
"title": "NIST's Integrated Colony Enumerator",
"description": "This work involves only data processing software and does not involve data to publish. Data are acquired by the users of this software by the following methods. Two methods can be used to acquire images of agar plates with bacterial colonies grown. In the first, plates were placed on a flatbed scanner, covered by soft gloss paper (HP LaserJet soft gloss paper), and 8-bit grayscale images of the plates were obtained at 300 dpi (dots per inch; 118 dots per cm), 600 dpi (236 dots per cm), and 1,200 dpi (472 dots per cm). In the second approach, images are acquired with a digital camera. Images are acquired at the maximum resolution of the camera with no zoom. More details are described in the manual for the software.",
"language": [
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"distribution": [
{
"accessURL": "https:\/\/github.com\/usnistgov\/NICE-Public",
"format": "Demo images in TIFF and code in MATLAB 2016b",
"description": "This work involves only data processing software and does not involve data to publish. Data are acquired by the users of this software by the following methods. Two methods can be used to acquire images of agar plates with bacterial colonies grown. In the first, plates were placed on a flatbed scanner, covered by soft gloss paper (HP LaserJet soft gloss paper), and 8-bit grayscale images of the plates were obtained at 300 dpi (dots per inch; 118 dots per cm), 600 dpi (236 dots per cm), and 1,200 dpi (472 dots per cm). In the second approach, images are acquired with a digital camera. Images are acquired at the maximum resolution of the camera with no zoom. More details are described in the manual for the software.",
"title": "NIST's integrated colony enumerator source code repository"
},
{
"accessURL": "https:\/\/doi.org\/10.18434\/M32073",
"title": "DOI Access for NIST's Integrated Colony Enumerator"
},
{
"downloadURL": "https:\/\/data.nist.gov\/od\/ds\/89811452D29952B5E05324570681C0AF2073\/Demo%20Images.zip",
"mediaType": "application\/x-zip-compressed",
"title": "Demo Images for Tutorial"
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{
"downloadURL": "https:\/\/data.nist.gov\/od\/ds\/89811452D29952B5E05324570681C0AF2073\/Demo%20Images.zip.sha256",
"mediaType": "text\/plain",
"title": "SHA256 File for Demo Images for Tutorial"
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{
"downloadURL": "https:\/\/data.nist.gov\/od\/ds\/89811452D29952B5E05324570681C0AF2073\/NICE_1.4_Essential.zip",
"mediaType": "application\/x-zip-compressed",
"title": "NICE essential files V1.4"
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{
"downloadURL": "https:\/\/data.nist.gov\/od\/ds\/89811452D29952B5E05324570681C0AF2073\/NICE_1.4_Essential.zip.sha256",
"mediaType": "text\/plain",
"title": "SHA256 File for NICE essential files V1.4"
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{
"downloadURL": "https:\/\/data.nist.gov\/od\/ds\/89811452D29952B5E05324570681C0AF2073\/NICE_Manual_April_2020.zip",
"mediaType": "application\/x-zip-compressed",
"title": "NICE Manual V1.4 April 2020"
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{
"downloadURL": "https:\/\/data.nist.gov\/od\/ds\/89811452D29952B5E05324570681C0AF2073\/NICE_Manual_April_2020.zip.sha256",
"mediaType": "text\/plain",
"title": "SHA256 File for NICE Manual V1.4 April 2020"
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"bureauCode": [
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"modified": "2018-06-30 00:00:00",
"publisher": {
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"name": "National Institute of Standards and Technology"
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"theme": [
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],
"keyword": [
"bacteria colony counting; pneumonia; pneumococcus; vaccine; counting software; fieldable imaging; multiplexed opsonophagocytic killing assay;"
]
}
