Data here contain and describe an open-source structured query language (SQLite) portable database containing high resolution mass spectrometry data (MS1 and MS2) for per- and polyfluorinated alykl substances (PFAS) and associated metadata regarding their measurement techniques, quality assurance metrics, and the samples from which they were produced. These data are stored in a format adhering to the Database Infrastructure for Mass Spectrometry (DIMSpec) project. That project produces and uses databases like this one, providing a complete toolkit for non-targeted analysis. See more information about the full DIMSpec code base - as well as these data for demonstration purposes - at GitHub (https://github.com/usnistgov/dimspec) or view the full User Guide for DIMSpec (https://pages.nist.gov/dimspec/docs).Files of most interest contained here include the database file itself (dimspec_nist_pfas.sqlite) as well as an entity relationship diagram (ERD.png) and data dictionary (DIMSpec for PFAS_1.0.1.20230615_data_dictionary.json) to elucidate the database structure and assist in interpretation and use.
About this Dataset
Title | Database Infrastructure for Mass Spectrometry - Per- and Polyfluoroalkyl Substances |
---|---|
Description | Data here contain and describe an open-source structured query language (SQLite) portable database containing high resolution mass spectrometry data (MS1 and MS2) for per- and polyfluorinated alykl substances (PFAS) and associated metadata regarding their measurement techniques, quality assurance metrics, and the samples from which they were produced. These data are stored in a format adhering to the Database Infrastructure for Mass Spectrometry (DIMSpec) project. That project produces and uses databases like this one, providing a complete toolkit for non-targeted analysis. See more information about the full DIMSpec code base - as well as these data for demonstration purposes - at GitHub (https://github.com/usnistgov/dimspec) or view the full User Guide for DIMSpec (https://pages.nist.gov/dimspec/docs).Files of most interest contained here include the database file itself (dimspec_nist_pfas.sqlite) as well as an entity relationship diagram (ERD.png) and data dictionary (DIMSpec for PFAS_1.0.1.20230615_data_dictionary.json) to elucidate the database structure and assist in interpretation and use. |
Modified | 2023-07-05 00:00:00 |
Publisher Name | National Institute of Standards and Technology |
Contact | mailto:[email protected] |
Keywords | per- and polyfluoroalkyl substances , PFAS , database , mass spectrometry , SQLite , emerging contaminants , high resolution mass spectrometry , non-targeted analysis , NTA , HRMS |
{ "identifier": "ark:\/88434\/mds2-2905", "accessLevel": "public", "contactPoint": { "hasEmail": "mailto:[email protected]", "fn": "Benjamin Place" }, "programCode": [ "006:045" ], "landingPage": "https:\/\/data.nist.gov\/od\/id\/mds2-2905", "title": "Database Infrastructure for Mass Spectrometry - Per- and Polyfluoroalkyl Substances", "description": "Data here contain and describe an open-source structured query language (SQLite) portable database containing high resolution mass spectrometry data (MS1 and MS2) for per- and polyfluorinated alykl substances (PFAS) and associated metadata regarding their measurement techniques, quality assurance metrics, and the samples from which they were produced. These data are stored in a format adhering to the Database Infrastructure for Mass Spectrometry (DIMSpec) project. That project produces and uses databases like this one, providing a complete toolkit for non-targeted analysis. See more information about the full DIMSpec code base - as well as these data for demonstration purposes - at GitHub (https:\/\/github.com\/usnistgov\/dimspec) or view the full User Guide for DIMSpec (https:\/\/pages.nist.gov\/dimspec\/docs).Files of most interest contained here include the database file itself (dimspec_nist_pfas.sqlite) as well as an entity relationship diagram (ERD.png) and data dictionary (DIMSpec for PFAS_1.0.1.20230615_data_dictionary.json) to elucidate the database structure and assist in interpretation and use.", "language": [ "en" ], "distribution": [ { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/mds2-2905\/ERD.png", "format": "Portable Network Graphics (PNG) image file", "description": "The entity relationship diagram (ERD) associated with the dimspec_nist_pfas.sqlite database file.", "mediaType": "image\/png", "title": "Entity Relationship Diagram" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/mds2-2905\/DIMSpec%20for%20PFAS_1.0.1.20230615_data_dictionary.json", "format": "Javascript Object Notation (JSON)", "description": "A data dictionary in javascript object notation (JSON) to accompany the dimspec_nist_pfas.sqlite database file.", "mediaType": "application\/json", "title": "Data Dictionary" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/mds2-2905\/LICENSE.pdf", "format": "Portable Document File (PDF)", "description": "The license for use and reuse accompanying these data.", "mediaType": "application\/pdf", "title": "Use Licence" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/mds2-2905\/README.pdf", "format": "Portable Document File (PDF)", "description": "The README file containing information about this dataset, and links to other resources supporting it.", "mediaType": "application\/pdf", "title": "README" }, { "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/mds2-2905\/dimspec_nist_pfas.sqlite", "format": "SQLite", "description": "A DIMSpec compliant database of high-resolution accurate mass spectrometry data for per- and polyfluorinated alkyl substances.", "mediaType": "application\/octet-stream", "title": "DIMSpec for PFAS" } ], "bureauCode": [ "006:55" ], "modified": "2023-07-05 00:00:00", "publisher": { "@type": "org:Organization", "name": "National Institute of Standards and Technology" }, "theme": [ "Information Technology:Data and informatics", "Environment:Environmental health", "Chemistry:Analytical chemistry" ], "keyword": [ "per- and polyfluoroalkyl substances", "PFAS", "database", "mass spectrometry", "SQLite", "emerging contaminants", "high resolution mass spectrometry", "non-targeted analysis", "NTA", "HRMS" ] }