{
    "identifier": "ark:\/88434\/mds2-3579",
    "accessLevel": "public",
    "contactPoint": {
        "hasEmail": "mailto:[email protected]",
        "fn": "Samuel P. Forry"
    },
    "programCode": [
        "006:045"
    ],
    "landingPage": "https:\/\/data.nist.gov\/od\/id\/mds2-3579",
    "title": "Measuring Microbial Community-Wide Antibiotic Resistance Propagation via Natural Transformation in the Human Gut Microbiome",
    "description": "This repository includes the raw data, analysis code, and results of a systematic analysis of natural transformation (i.e., horizontal gene transfer; HGT) of bacteria in a naturally occurring microbiome (human stool) following exposure to free extracellular DNA (eDNA) that coded for antibiotic resistance. A full description of this effort is available in the associated publication.\u00a0",
    "language": [
        "en"
    ],
    "distribution": [
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/Analysis&Visualization\/ddPCR\/FIG1-ddPCR-Analysis.Rmd.sha256",
            "mediaType": "text\/plain"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/Analysis&Visualization\/WGS%20-%20Illumina\/FIG4-WGS-AnalyzingProcessedReads.Rmd",
            "mediaType": "application\/octet-stream"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/Analysis&Visualization\/WGS%20-%20Illumina\/FIG4-WGS-AnalyzingProcessedReads.Rmd.sha256",
            "mediaType": "text\/plain"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/Analysis&Visualization\/WGS%20-%20Illumina\/FIG5-WGS-AnalyzingProcessedReads.Rmd",
            "mediaType": "application\/octet-stream"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/Analysis&Visualization\/WGS%20-%20Illumina\/FIG5-WGS-AnalyzingProcessedReads.Rmd.sha256",
            "mediaType": "text\/plain"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/Data.zip.sha256",
            "mediaType": "text\/plain"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/HGT_STORMS_Checklist.xlsx",
            "mediaType": "application\/vnd.openxmlformats-officedocument.spreadsheetml.sheet"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/HGT_STORMS_Checklist.xlsx.sha256",
            "mediaType": "text\/plain"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/00README.txt",
            "description": "This file describes the organization of this data record.",
            "mediaType": "text\/plain",
            "title": "READEME file"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/00README.txt.sha256",
            "description": "This READEME file describes the organization this data record.",
            "mediaType": "text\/plain",
            "title": "README"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/Analysis&Visualization\/CFU\/FIG2-CFU-Analysis.Rmd",
            "description": "This READEME file describes the organization this data record.",
            "mediaType": "application\/octet-stream",
            "title": "Read Me"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/Analysis&Visualization\/CFU\/FIG2-CFU-Analysis.Rmd.sha256",
            "mediaType": "text\/plain",
            "title": "README"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/Data.zip",
            "description": "This compressed folder contains the raw data collected in the analysis of aforementioned samples. This includes CFU count results, ddPCR gene quantification, long-read next-generation sequencing (Nanopore) of isolates, and shotgun metagenomic sequencing characterization of microbiome samples.",
            "mediaType": "application\/zip",
            "title": "Data"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/ark:\/88434\/mds2-3579\/Analysis&Visualization\/ddPCR\/FIG1-ddPCR-Analysis.Rmd",
            "description": "Analysis code of ddPCR data.",
            "mediaType": "application\/octet-stream",
            "title": "Figure 1 - ddPCR Analysis"
        }
    ],
    "bureauCode": [
        "006:55"
    ],
    "modified": "2024-09-26 00:00:00",
    "publisher": {
        "@type": "org:Organization",
        "name": "National Institute of Standards and Technology"
    },
    "theme": [
        "Bioscience:Microbial measurements"
    ],
    "keyword": [
        "microbiome",
        "horizontal gene transfer",
        "natural transformation",
        "antibiotic resistance"
    ]
}