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Software and Data associated with "Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA"

The purpose of this software and data is to enable reproduction and facilitate extension of the computational results associated with the following referenceDeJaco, R. F.; Majikes, J. M.; Liddle, J. A.; Kearsley, A. J. Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA. Biophysical Journal, 2023, https://doi.org/10.1016/j.bpj.2023.03.002.The software and data can also be found at https://github.com/usnistgov/dye_dna_plates.

About this Dataset

Updated: 2024-02-22
Metadata Last Updated: 2023-03-15 00:00:00
Date Created: N/A
Views:
Data Provided by:
fluorescence
Dataset Owner: N/A

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Table representation of structured data
Title Software and Data associated with "Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA"
Description The purpose of this software and data is to enable reproduction and facilitate extension of the computational results associated with the following referenceDeJaco, R. F.; Majikes, J. M.; Liddle, J. A.; Kearsley, A. J. Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA. Biophysical Journal, 2023, https://doi.org/10.1016/j.bpj.2023.03.002.The software and data can also be found at https://github.com/usnistgov/dye_dna_plates.
Modified 2023-03-15 00:00:00
Publisher Name National Institute of Standards and Technology
Contact mailto:robert.dejaco@nist.gov
Keywords fluorescence , numerical-optimization , mathematical-modeling , fluorescence-data , total-least-squares , python , intercalating dyes , noise-removal
{
    "identifier": "ark:\/88434\/mds2-2762",
    "accessLevel": "public",
    "references": [
        "https:\/\/doi.org\/10.1016\/j.bpj.2023.03.002"
    ],
    "contactPoint": {
        "hasEmail": "mailto:robert.dejaco@nist.gov",
        "fn": "Robert De Jaco"
    },
    "programCode": [
        "006:045"
    ],
    "@type": "dcat:Dataset",
    "landingPage": "https:\/\/data.nist.gov\/od\/id\/mds2-2762",
    "description": "The purpose of this software and data is to enable reproduction and facilitate extension of the computational results associated with the following referenceDeJaco, R. F.; Majikes, J. M.; Liddle, J. A.; Kearsley, A. J. Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA. Biophysical Journal, 2023, https:\/\/doi.org\/10.1016\/j.bpj.2023.03.002.The software and data can also be found at https:\/\/github.com\/usnistgov\/dye_dna_plates.",
    "language": [
        "en"
    ],
    "title": "Software and Data associated with \"Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA\"",
    "distribution": [
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/mds2-2762\/singlehtml.zip",
            "description": "This compressed file contains documentation of this software and dataset in the HTML format. It can be viewed by downloading, extracting, and opening the index.html file with a browser.",
            "mediaType": "application\/x-zip-compressed",
            "title": "Documentation in HTML format"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/mds2-2762\/DyeDNAPlates_v0.7.zip",
            "description": "This compressed folder contains all software and data required to reproduce the manuscript. The version is 0.7.",
            "mediaType": "application\/x-zip-compressed",
            "title": "Version 0.7 of the software"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/mds2-2762\/dye_dna_plates-1.0.1.tar.gz",
            "description": "Version 1.0.1 of code\/software.",
            "mediaType": "application\/gzip",
            "title": "Version 1.0.1"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/mds2-2762\/dye_dna_plates-1.0.1.zip",
            "mediaType": "application\/x-zip-compressed",
            "title": "Version 1.0.1"
        },
        {
            "downloadURL": "https:\/\/data.nist.gov\/od\/ds\/mds2-2762\/REPRODUCEME.md",
            "description": "Step-by-step instructions enabling reproduction of paper",
            "mediaType": "application\/octet-stream",
            "title": "File describing reproduction procedure"
        }
    ],
    "license": "https:\/\/www.nist.gov\/open\/license",
    "bureauCode": [
        "006:55"
    ],
    "modified": "2023-03-15 00:00:00",
    "publisher": {
        "@type": "org:Organization",
        "name": "National Institute of Standards and Technology"
    },
    "theme": [
        "Mathematics and Statistics",
        "Metrology",
        "Health",
        "Chemistry",
        "Bioscience"
    ],
    "issued": "2022-09-02",
    "keyword": [
        "fluorescence",
        "numerical-optimization",
        "mathematical-modeling",
        "fluorescence-data",
        "total-least-squares",
        "python",
        "intercalating dyes",
        "noise-removal"
    ]
}

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